Scaffold Ga0334920_001485

Overview

Basic Information

• Taxon OID: 3300034002
• Scaffold ID: Ga0334920_001485
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 16HMC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7794
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020517	Metagenome	223	Y
F079676	Metagenome / Metatranscriptome	115	Y
F081092	Metagenome / Metatranscriptome	114	Y
F091480	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334920_001485_3202_3444	F091480	AGTAGG	MRDLHVYVEPVGLGARADRKAFYSRRADGPYYRWLYAEGQGGWLYSRVSLDRPTLRMLCVAPWEAVPAALRSRLGEHYLE
Ga0334920_001485_3484_3714	F020517	AGGCGG	VSGQKPVGPDVKHYLVKRRNEILPKRRSWNEVQAELRQKGTDADESMLFRGIVTEDGTEYRDMYADSRTQVTEHTA
Ga0334920_001485_3935_4096	F081092	GGCGG	VSGYDDFIERLEGALADDEGREDFLEYLEGLTSEGRAEILAEADRREEKTELT
Ga0334920_001485_4294_4515	F079676	GGAG	MPAETAEHGARIKAGDRVRALDGAYKGRVGTALRVVTSRDEGRTSRTILVSFPSGGADYLDADALEKAETADE