Scaffold Ga0334919_000010

Overview

Basic Information

• Taxon OID: 3300034001
• Scaffold ID: Ga0334919_000010
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 15HMC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 261467
• Total Scaffold Genes: 231
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 145 (62.77%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005362	Metagenome / Metatranscriptome	403	Y
F090844	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334919_000010_256062_256304	F090844	AGGAG	MADDNPRKTSIEESTSDPDLKPDTTPNAAEEVNPANDKRSLDIGESGQFAPGGYYNQHGINESERLDLDEFTATRPPDKK
Ga0334919_000010_83714_84160	F005362	GAG	MLIQLLCRVLHIAATCTSLGGLFYARTVLWPTLALLPEEERERFLRGAIRRFSYIKWAGVTVVAVTGVIQWFYTYPYVLDRKLYVVYFTIKMIGAFGLFSITFLLALPSEKLRGMQEHRAFWSALNIVCGLTILVGAALMRSVAKGHL