Scaffold Ga0310131_016721

Overview

Basic Information

• Taxon OID: 3300033997
• Scaffold ID: Ga0310131_016721
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-FT7-sol
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2594
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064516	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310131_016721_1164_1736	F064516	N/A	MSPAKTTEATTEQLCRLFDLTSARVGQLGKDGIIFKTGRNKFDLWKSIKGYIGFLQKSKVDGARNIERSETVGDAHELEELVRQVKAARTYNDARTLKVQIDALRSGYALEVEQNRYCSLAHIEDGMDAIASVVRNAIKRMEADLPPMLEGLDAAGMKRTIAEKSAQVIQIIYDEGERLKSPITGDSAAD