NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310131_000991

Scaffold Ga0310131_000991


Overview

Basic Information
Taxon OID3300033997 Open in IMG/M
Scaffold IDGa0310131_000991 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-FT7-sol
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28388
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (76.09%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003378Metagenome / Metatranscriptome490Y
F003768Metagenome469Y
F028157Metagenome192Y
F033428Metagenome177Y
F041769Metagenome159Y
F051124Metagenome144Y
F061844Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0310131_000991_1145_1387F051124GAGGMTKKTDYVERYVNTVGEGWCQKYVLIAIVEDEEGDQSFYVQCMENQTAAETIGLCEAVSHIQKAKIAAAWIARENDEPDE
Ga0310131_000991_1538_1774F028157GAGGVTADPDYLTPKFITVMGDHDGHARWVAPIDCTDVMSAYRQGGVHLLVTLDQEGHVTVAFKPGRHWEASWSPPITLERR
Ga0310131_000991_16066_16239F061844N/AMAKYLVSGPFPVTGVQPGGHVDGSGIDNVELLIAAGVLSPVAEEVKKPSKADKAGDK
Ga0310131_000991_2084_2308F041769AGGAGMTYDPDALRQMNEEAQLRISELSVALAHVTEQRDNLEDSLTAAIRETDAAKAQIAALTATVERLRLHIQQGVEL
Ga0310131_000991_2984_3391F033428AGAAGGVSRLEGQLVPTVHVEKLKVRFANLKDELKATIREIADEAHGGISLDPPTERRVGIARILLEVAEQDGHIDKDLIRSICMHRTGKQYQTAGLALLDLSWIDAERVWSTLMDIYSDRVLLEYIPSSNHYIIKEKTHV
Ga0310131_000991_8349_8627F003378AGGAGMSQTDVNIKSNATIAKALDLGQRLFSLFLANALPAIAGGAVIGVSVAKAAMLSGIMACVQVIQKLAAASVDGDLTAEEIKEAFGNGKPAKKK
Ga0310131_000991_9019_9264F003768AGGAMAHFAQIIDGKVQQVIVVSNDDAPTEAAGKTFIASLGLNGEWVQTSYNNNPIEGKDRGKYAGIGDTWDGSQFSSPVSGEDA

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