Basic Information | |
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Taxon OID | 3300033997 Open in IMG/M |
Scaffold ID | Ga0310131_000991 Open in IMG/M |
Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-FT7-sol |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 28388 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (76.09%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Oklahoma | |||||||
Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003378 | Metagenome / Metatranscriptome | 490 | Y |
F003768 | Metagenome | 469 | Y |
F028157 | Metagenome | 192 | Y |
F033428 | Metagenome | 177 | Y |
F041769 | Metagenome | 159 | Y |
F051124 | Metagenome | 144 | Y |
F061844 | Metagenome | 131 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0310131_000991_1145_1387 | F051124 | GAGG | MTKKTDYVERYVNTVGEGWCQKYVLIAIVEDEEGDQSFYVQCMENQTAAETIGLCEAVSHIQKAKIAAAWIARENDEPDE |
Ga0310131_000991_1538_1774 | F028157 | GAGG | VTADPDYLTPKFITVMGDHDGHARWVAPIDCTDVMSAYRQGGVHLLVTLDQEGHVTVAFKPGRHWEASWSPPITLERR |
Ga0310131_000991_16066_16239 | F061844 | N/A | MAKYLVSGPFPVTGVQPGGHVDGSGIDNVELLIAAGVLSPVAEEVKKPSKADKAGDK |
Ga0310131_000991_2084_2308 | F041769 | AGGAG | MTYDPDALRQMNEEAQLRISELSVALAHVTEQRDNLEDSLTAAIRETDAAKAQIAALTATVERLRLHIQQGVEL |
Ga0310131_000991_2984_3391 | F033428 | AGAAGG | VSRLEGQLVPTVHVEKLKVRFANLKDELKATIREIADEAHGGISLDPPTERRVGIARILLEVAEQDGHIDKDLIRSICMHRTGKQYQTAGLALLDLSWIDAERVWSTLMDIYSDRVLLEYIPSSNHYIIKEKTHV |
Ga0310131_000991_8349_8627 | F003378 | AGGAG | MSQTDVNIKSNATIAKALDLGQRLFSLFLANALPAIAGGAVIGVSVAKAAMLSGIMACVQVIQKLAAASVDGDLTAEEIKEAFGNGKPAKKK |
Ga0310131_000991_9019_9264 | F003768 | AGGA | MAHFAQIIDGKVQQVIVVSNDDAPTEAAGKTFIASLGLNGEWVQTSYNNNPIEGKDRGKYAGIGDTWDGSQFSSPVSGEDA |
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