Scaffold Ga0334979_0175768

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0175768
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1278
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015434	Metagenome / Metatranscriptome	254	Y
F074801	Metagenome / Metatranscriptome	119	N
F079590	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0175768_525_692	F015434	GGA	MESKYPDPWSRHTPKGMSIVTTTTKSKKCCDTCECEPTKEEQFNKLMETQVSFEE
Ga0334979_0175768_682_879	F074801	GAG	VLTTTAQPVINMGILDNLEASLFPEEAGNGEIIQDELPIKLEERLSIEQIEKYNERLKYMEENGI
Ga0334979_0175768_74_379	F079590	N/A	MISSVVDNSAKYYVCLAKSDQDWSSVPAENEKKVYYLFVFDSQTLIYDSGVWNKVQTKSGGYNYVMESIGMSARINTSMSSQLWTSVNESLIGSPTKLEIF