Scaffold Ga0334979_0134589

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0134589
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1508
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004111	Metagenome / Metatranscriptome	452	Y
F011150	Metagenome / Metatranscriptome	294	Y
F013409	Metagenome / Metatranscriptome	271	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0134589_1104_1274	F011150	GGA	MDINYYHKQHDKIKEQFRHDIIMSKIKQREDKLFRNMFIKISLIITAIVLLVTVVF
Ga0334979_0134589_251_886	F004111	AGG	MREKIKQVNDLCAANGAYINQHGKKTVSAWSKVKYFREVFGTEFGINCVIQEHSDRYVIMKCIITKSDPEHIVATGYSKQYRDKPGYLEIAETFAITRALSFMGILLEDITSKEEYEELDIPVRLQESSIPAVQPMNGKDTTSNNINYDDSIVNELTKKIAFAPHTAKLDFLWRANKDLLNQIKIKDLATYNSILQRFNSKRDEITTQNEV
Ga0334979_0134589_861_1100	F013409	AGTAG	MKIILTIIMMNGTIHNLGYEIDSYSPRICDKLFDKITYIGKSSGKNKYGTFYKSKEVFAHSCSIEKTTKGNNERKNKTS