Scaffold Ga0334979_0102468

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0102468
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1781
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F017789	Metagenome	238	Y
F072096	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0102468_1357_1578	F017789	N/A	MAITDLADLEMNGSIPDDWKFTFKKGSTLYDEVGSAWRERSENTAYLCHKNAPDSKQRWVHPDTMIDVYKVSP
Ga0334979_0102468_218_400	F002707	N/A	LENKMTQLQALTKCLVLAITAPDDHKAQRASELAEEIARGLSVDQVEDCKAQALELVEAL
Ga0334979_0102468_402_590	F072096	AGG	MTKQDIQELAENALHEACRHIQDALGVKTGDTAGMFFCGQQEDEIHQIFCRYIETELMFKSE