Scaffold Ga0334979_0086040

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0086040
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1977
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F009402	Metagenome	318	Y
F018368	Metagenome / Metatranscriptome	235	N
F089938	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0086040_1165_1422	F006546	N/A	MKWKYIGNRTGDAKKGEQYIVEADELTELYMKSVPYPQTVNVYVVQPPSPRNNWSKNNVGDIIKICNPYYEMATYSHPGFVPVKE
Ga0334979_0086040_1434_1592	F089938	N/A	MLNLDQAFTVQEFVRVNRTKRVWEIQDELYSLICILTKKEEEKKNETETAAA
Ga0334979_0086040_1740_1976	F018368	N/A	MTITTLTTRGQKISNQIVSADVIEINQGPFSFTALTESIITEEDKIVIRYEVDDEYCKHEITNDMLNNAHVEDGHIVFA
Ga0334979_0086040_492_827	F009402	AGGA	MKKLDEQFESAGFKYKQTHREDMFAIYERKYINSTKDLHYESIKIQSHNGMEIAGNKIPPSEYYPSSNSWGRHGYTCITKKDAYTRLDRMMKEDVINKEAANKKAERKNAK