Scaffold Ga0334979_0083757

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0083757
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2009
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F003863	Metagenome	464	Y
F017972	Metagenome	237	Y
F027417	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0083757_1274_1558	F003863	GGAGG	MESKEVSGKQAIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIINPDSRLTVGVHTRANAVPEVAGRTDYEGADESYDGGEA
Ga0334979_0083757_1555_1863	F017972	GGAGG	MRTRHLQLVSQEHSVTTTTRSIVSSPYGPVSPGSTTLLAQETLRANQEARLLELLSSLESVVENLNYKSFTAYDTLVIATEGVRVALLGTQTDEAGTNADRS
Ga0334979_0083757_166_402	F027417	AGGAGG	MIYDYRVTFVTDYLTITTNVCLELNDTTGNLSDEAYGRATVKGMNNIEDEIGKIDETIINDITVTLILDDEEIELNEG
Ga0334979_0083757_830_1081	F001477	AGGAGG	MSNIYTIHPRKSELILLYEVVDESGRAEWGGANAEQAMQWLTLAPDNARLLVSAWDSDEEDAHLVGQTIDITEIVQQARQVGR