Scaffold Ga0334979_0069904

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0069904
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2234
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016125	Metagenome	249	N
F023831	Metagenome / Metatranscriptome	208	N
F100667	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0069904_1026_1934	F100667	AGG	MISIFSDTKRLEYALARLADAAKVDLGLVIKQEGAYVARTIMQITPPTGDKLAKGAQTKIPIVTGGFITKTKAGGLSTNARQQGENAILGDLFGGRQMAKEKSIGLFQKIGNSTEVPPRGGQNETMGVNLGWEGSKKIRIYRKFWQPGASIAQMRAFHYANRNERGRPKQVTRSAIGRWQVQDQMWISNQAADAYLKYTQKKVGLAKAGFAAAAMACGVRVPSWIRRHMAKAGTAQVQFGQNPFVSARTTGNKIPDLQRVVDSALKIRYKVTLSKIRALNANRAVNLGFAKVKGGMVIPKEA
Ga0334979_0069904_1931_2233	F023831	N/A	MSTRTNIRNATANALTGALVVPTANILRGRNNTIASVSFPAAAVYAVSEQIEVRTLGPSNRTQYRQLQLVVDYFIAESGTYLIDDLFDTGSAAVEAAVLAD
Ga0334979_0069904_709_1029	F016125	N/A	MAAVRDFDPTQINSDFSAILEQAGISFTYQGAAVTGIWSAASNAFADFEDQRRDDSKFTIFLLTSSVSAAPKVTQTLSRAGITYYVERVTLDAEGAGCELGVAKVI