Scaffold Ga0334979_0064097

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0064097
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2350
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015970	Metagenome / Metatranscriptome	250	Y
F042184	Metagenome	158	Y
F043818	Metagenome / Metatranscriptome	155	Y
F061577	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0064097_1072_1236	F061577	N/A	MPRPKTEMTKSGKTIAVRATLSEWNEFKRLGGIKWLRQYLADSIEKHQQTKETK
Ga0334979_0064097_247_492	F043818	N/A	MVEKRIQGGQMRLKHTIAAILEENQDELFCPFCTKPKGNEIDCCDQSGTWFKLSDFDFDSQFSIAQQIFNSQKGVPTQKTD
Ga0334979_0064097_459_740	F015970	AGGAG	MMAFDKAKWEAYQQLDDDDIMDAIQGSVAIPLAIKSGDWEYAQQFIKDRIDNKMQRRAEFAFYNLIKTSSIDDDDELRMLRTLWLKNEYKGDK
Ga0334979_0064097_727_954	F042184	AGG	MEFDIELYDFDLDIKAWVEYEYDPEYSPVEGMYNKFNWVAYLQVGNTRVDITDELSAKDSKHIEKQIEESCDDGI