Scaffold Ga0334979_0063182

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0063182
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2370
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F005697	Metagenome / Metatranscriptome	392	Y
F021065	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0063182_1600_1794	F000403	GGAG	MSDFIEIINPQTMNAKLMENGEVIAEYKVEQCDKCSKLTKFDAFGYQKGYDKAEKIIWFCAGCR
Ga0334979_0063182_1791_2357	F005697	N/A	VEFSAEKGYVLVEAKAFRNDTDLHPAGIDYAYGYQGAYQPNMRRWFVEDSTTSAIMRVQQLVMGGAERSTKEIMEQVERTPAKIANTDSTDYWTTKFGDVPSYKTAAEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCSHGHMIWKQSHEGAPKSWGGYFCTERTKATQCTPRWYVLRSTGKWEPQV
Ga0334979_0063182_684_1178	F021065	GGAG	MKMQLTREEEFTCHEAALYLASQNKDYWRTREGGYSTDKSLHDLIAQDAQSIGSEWVVAKYLGLEFDPFEQKGKVKADVGSHFEVRWTKYVAGHLVVHEYDRPNDVAILVTGESPNYFIAGWIPIAMAKRPKYRHTKQPNWWVTQINLQPIENLRRSNYGNNPV