Scaffold Ga0334979_0057727

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0057727
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2499
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001781	Metagenome / Metatranscriptome	635	Y
F002387	Metagenome / Metatranscriptome	565	Y
F005504	Metagenome / Metatranscriptome	398	Y
F007644	Metagenome / Metatranscriptome	347	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0057727_1008_1283	F000263	AGG	MNNEDIGLPPHLQRLINYDIDGLNIMHGELKNLMLIWEKELDKAQAIEDESEEAMDSMERKYCEGFLDALTALYKLTYDLSFAIKEKGGQK
Ga0334979_0057727_1283_1513	F001019	GGAGG	MSYEPSLEILEVNYGCSPGGVDTFEVYDRLDIDPIVNLPIFETESLTEAVLFCYNLGKDFIVRTLAEWEERELMNA
Ga0334979_0057727_1663_1983	F001781	N/A	MENMMKPDDKDKLNECLKILDTTDLGLSMVWLWTWSTINNIFEDETYKQKVTIDQMWDNLCEAVQAGQGFSLEYGAEQHQDDVLEWMMNREYIVDTMFEEEEDEDE
Ga0334979_0057727_268_492	F002387	AGGAGG	MASFLEDVNQMVIDAVYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDEFIQSEFNKFYNLTEIDEDYFEIL
Ga0334979_0057727_3_275	F005504	N/A	LTLEYEEETGWGGELEIVRGEVKELLEYENRCYACQSFDTLSYCENDCGEFCLECSQGSWQNEVAMAECQTHSVVLANEKTYTQEEALNG
Ga0334979_0057727_818_1015	F007644	AGAAGG	MATKTSRFLEYMKIHLISLNQDLDKHRPEDTLLVEYIEGQIEATKHLLSVATDIMNNSNERYINE