NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0057606

Scaffold Ga0334979_0057606


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0057606 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2502
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042157Metagenome158N
F068425Metagenome124Y
F071219Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0057606_1878_2090F071219N/AMIHQDQPDNSILVIITSVIIQAGVWTSDWFGNMNLVGIYDTIYDLAKLGALIVSMWASYRVAKKNKNNEQ
Ga0334979_0057606_285_878F068425N/AMGMGVNNNNMKPHHQLITFAVLCLILVIGLNHCAKDKPKTIPFDYKTEAEMMKKQFGIEQAILLNQLQAANIRLQSANNAKDSIRKREISLSNTNIALLKKLRDRLPKECDTVFVLCDDIINVKDSSYAALFTAYQSCVDVSTIKDSLIVAYKAENVTDSTLLAVSKQETKHERKGKVAAWCVGGAMFILWLVVGLK
Ga0334979_0057606_47_301F042157N/AMKLKQKYNAPDNKQLKKIADYLIYVLLPFIQTSLALAETQGLITLKQAFWGGLAATFLLINTKFLTKFTTETPTTAPLLDGDGC

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