Scaffold Ga0334979_0056541

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0056541
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2531
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012570	Metagenome	279	Y
F028501	Metagenome / Metatranscriptome	191	Y
F095133	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0056541_1264_1491	F028501	AGG	MKTITAKYDGFCAATGARILPGDVIQWQRGRSVLLERKAAKIDTVTLIGEHGPRDYYRNARGRCIDAPCCGCCTI
Ga0334979_0056541_1742_2023	F012570	AGG	MQILTIDGTTYKVKFDRDPIELAKLARKPYRPKKPKDIRKFPLWTPAVSTARYVRQFETMNNLLPSEYFPRLNVETAAQYDSTIPLCEVFNDD
Ga0334979_0056541_2013_2282	F095133	GAGG	MMTNTAAAAASTGRPYPHYLERVDVLLDDTWWSIWVDYEPADASVGLPATAWLVHAHVAEHYADIADYLSESTIKRLETEAVDYLSGGG