NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0051420

Scaffold Ga0334979_0051420


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0051420 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2671
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008689Metagenome329Y
F028165Metagenome / Metatranscriptome192N

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0051420_649_888F008689N/AMRFGDVIQALMAGGGNAVWRQDWDGHVFIRYSELWNAFEVHTTGEAVRQMEELTLSPGDLFANDWAVVVLDPQSGLVKQ
Ga0334979_0051420_885_1316F028165GGAGGMALAFSVDEKKERIRQAMEIYNETGSWPTAKNMTTRQSVEKWVRNPELLTYATSLGYQPLCTDQVATFAPTTRHPQCHMSFSGAIVHMKEDRYICRDGARLHYAIQHGQLVMFKLDGAGNRHHAGPAYFRGADVMATDWVIVK
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