Scaffold Ga0334979_0046967

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0046967
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2813
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008812	Metagenome / Metatranscriptome	327	Y
F057320	Metagenome / Metatranscriptome	136	Y
F089832	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0046967_1214_1609	F008812	N/A	METKQEIKRNGQMIQWVGIVITILGLAYTGVKDYQKGDIKFPPMPQKPVLTKVVYPVQYCLMAYDPNVDKVFYLHENGQWHDYAPQQRRYETQTQPYQAQGATAVAGPYGSQGTPAYRYGQSPQASTNPIR
Ga0334979_0046967_1916_2173	F089832	N/A	MQKVPRGRIMSKYYIKCGTLELIYSTDKKPMAAAADVLWESNKFDVLDEHFYVDERGFKDYSTALPDTKVYKTEKIITKAGWSIE
Ga0334979_0046967_2146_2712	F057320	GGA	MSYVGLYDDAGSKNAFYIVKDKKIGRKRVGFKEFENEQEAQFAHRVQKHLAQFDLAPMVYGDVGFIRRHDGEMTCYGYLTEVARPMPTCHDDDCDGECFQSECKNGTTICELVYDLGEHGLEYNDSHKGNFGYVRRRGSWVPVVIDLGIESFTDWDEDIYGQFDYAADEFDDYGRCNCVQCKKFREEE