NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0041282

Scaffold Ga0334979_0041282


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0041282 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3027
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002269Metagenome / Metatranscriptome576Y
F007029Metagenome / Metatranscriptome359Y
F015095Metagenome / Metatranscriptome257Y
F020906Metagenome221Y
F030767Metagenome / Metatranscriptome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0041282_1_210F020906N/AVAATAFDQTAYLHNLGGGAVYLGAANVSAANGYKLDNGDKITIGVGDHEALYAIAANGTHTVSVLTQIN
Ga0334979_0041282_2194_2367F030767GAGGMATYKTKCRLCARITEHIERVVTDNLPPYVKTLQCVKCGVMGVVMMEDLKDDTQRNN
Ga0334979_0041282_231_416F002269AGGAGMKEQLIAAAKSYGRAAIASAAALYMSGISDPKVLANAFIAGLIGPLLKALQPSEGQFGVS
Ga0334979_0041282_416_631F015095N/AMERAQLLIGITLGVTTILGLGAGLIRHFVKYYLAELKPDGNGGHNLAGRVERIEKRVDRIYEILLEDRLAK
Ga0334979_0041282_908_1522F007029AGGAGMSFLDNYEDVNARIKRFRAEFPSGRLIASIEHIDVMAGTVLVKAEAYREYEDQVPSAVDYAFGNVSTYPNNLKKWFIEDTITSAYGRCIGLLTPSLNHKARPTMQDMEKVENLPADPDPWSTKASIEDMTTMASAVLEIGKTLGGEQVAEAPRCPHGTMIWATGEAKSTGKPWAAYKCTERVRANQCNPVWHVLNSQGKWVPQV
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