NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0035160

Scaffold Ga0334979_0035160


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0035160 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3313
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005697Metagenome / Metatranscriptome392Y
F009503Metagenome / Metatranscriptome317Y
F014089Metagenome / Metatranscriptome266Y
F025683Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0035160_1507_1698F014089N/AMSDLIEIIYPQTMTAKLLQNGEVIAEYKVEQCDGCAKLLKLDPFGYKVGQAREKLAWLCGDCR
Ga0334979_0035160_1877_2533F005697AGGCGGMGFLDNYEASRERLERWLSNFPLGRIETRIVEFSAEKGFVLVEAKAFRNHDDELPAGIDFAYGYQGAYQPNMKRWFVEDTVTSAIMRVQQLVMGGAERSTKEIMEQVEKTTAKTANTDSTDYWTTKFGDVPSYKTAAEAEQSGIPSLGSSMDEIAKQLGGTLAEESPQCSHGHMIWKKSHDGAPKTWGGYFCTERTKATQCTPRWYVLTSTGKWAPQV
Ga0334979_0035160_2533_2706F025683GGAGMVLDLLDPQTLGRLVLVVILMVISAAAGYAKGFKEGKREGMARRKAMVRHLNNKAVN
Ga0334979_0035160_874_1035F009503AGGAMDKVHFECRMCKKKTSQIVVKITDLLPPGVETIQCTVCSCMTVAQIGESLANL
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