Scaffold Ga0334979

Basic Information
Taxon OID	3300033996 Open in IMG/M
Scaffold ID	Ga0334979_0034075 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3374
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (61.54%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F011394	Metagenome / Metatranscriptome	291	Y
F066776	Metagenome / Metatranscriptome	126	Y
F072349	Metagenome / Metatranscriptome	121	Y
F105192	Metagenome / Metatranscriptome	100	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

291

Metagenome / Metatranscriptome

126

Metagenome / Metatranscriptome

121

Metagenome / Metatranscriptome

100

Protein ID	Family	RBS	Sequence
Ga0334979_0034075_1204_1437	F066776	AGG	MLHLTEKGVEVFIKRSQTKLQESFWNNYDLVIWKKDSGGYTDVKGMYRKDAWGKAEKISVSREGIWELPKRYVKYFK
Ga0334979_0034075_1719_2033	F011394	AGGA	MFIDKNKDHFKYGVNEWTGEPNKPTFYNKDMALKIRELKKPDGNLQMDIVKYPDFLAIRLYEDNFAQYDGSMRVRVIEYVEMVKNILESYGVRVELEGKPGGRR
Ga0334979_0034075_2539_2775	F072349	AGGCGG	MDKVLCYSCNKSKNELATKKSLLMPINLLLCKSCTENKIEPRWIIILAGRQYGAEHVKEYIAKKKYIGLDITASELLI
Ga0334979_0034075_2806_3114	F105192	N/A	MNISITQILITLFAASISGVFTAWINSRRVKKDKIAQLADKAHDQLLLEIKDLQIKLYKLEKDLNEWKDKYFEALQELIRVKAELEGTMLKLTHIEMHSDED

Protein ID

Family

RBS

Sequence

Ga0334979_0034075_1204_1437

AGG

MLHLTEKGVEVFIKRSQTKLQESFWNNYDLVIWKKDSGGYTDVKGMYRKDAWGKAEKISVSREGIWELPKRYVKYFK

Ga0334979_0034075_1719_2033

AGGA

MFIDKNKDHFKYGVNEWTGEPNKPTFYNKDMALKIRELKKPDGNLQMDIVKYPDFLAIRLYEDNFAQYDGSMRVRVIEYVEMVKNILESYGVRVELEGKPGGRR

Ga0334979_0034075_2539_2775

AGGCGG

MDKVLCYSCNKSKNELATKKSLLMPINLLLCKSCTENKIEPRWIIILAGRQYGAEHVKEYIAKKKYIGLDITASELLI

Ga0334979_0034075_2806_3114

N/A

MNISITQILITLFAASISGVFTAWINSRRVKKDKIAQLADKAHDQLLLEIKDLQIKLYKLEKDLNEWKDKYFEALQELIRVKAELEGTMLKLTHIEMHSDED

NMPFamsDB