Scaffold Ga0334979_0032976

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0032976
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3438
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F033321	Metagenome	177	Y
F040479	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0032976_1975_2130	F003212	AGGAGG	MKDKWLVTIEIDTYDGDPKGWDWSYYFVSDEVKVISSEFKGRVLPEEADNE
Ga0334979_0032976_2432_2683	F001477	GGAG	MSNVYTIHPPKSDLILFYEVVTPEGENEWGGANAEQCMQWLTLAPNNSRVLVSAWDSDEEDAHLVGQTIDITEIIQRAREVGR
Ga0334979_0032976_2753_3040	F003863	GGAGG	MENRQVSGVQAIHHRNYRRARDRALVRLSHLYADEYRRLLVEEREADELEGKKWVGVIDNTRLTITTHTRANAVPDVAGRTDYDRENEGYNGGEE
Ga0334979_0032976_3145_3354	F040479	N/A	LLAQETLRANQEARLLELLNSLESVVDNLNFKSFTAYDTLVIAMEGVRVALSNIATDEAGTDADVRRVW
Ga0334979_0032976_953_1099	F033321	GAGG	MSRELEVLREEYKRAFENPIFDDPKDYCVLLDLIQDRINEIEVRYANH