Scaffold Ga0334979_0021623

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0021623
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4351
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002455	Metagenome / Metatranscriptome	557	Y
F047003	Metagenome / Metatranscriptome	150	N
F093750	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0021623_1_531	F047003	N/A	MGCDIHLYIEYKSKDGYDPAWQGFGGNINPGRNYAMFALMADVRNCYSDGKLPVLVERRGMPDDAGYTATDDNRIYISETKSEDYVSMETANRWVKSGSSKFINDKDGNPIWVTNPDAHSHSWLTTSEFESVINKYLELEAGWHKVRVEEHNKMVKEENIQPDSWAYAPPSMVDEPE
Ga0334979_0021623_2155_2502	F002455	N/A	MTDNRTYYYDIDGKKLPDPESMAAYLLDEGVLFVTSAIDRCTQKECLGLYILINDYFVPASDAESVTYDQLPKLFEMYKEKRWDGVSQFVADKRGIPDLHWRDKNSAFQKKLDLL
Ga0334979_0021623_4011_4280	F093750	N/A	MKFKVSYYDFDTDKYVTKECYRMSFYDGVFEFMPVDDPIKIYKSIIIDHPIFSVSQNNTGFISISVVGYQYMKNGFYEKTTTKVENVRN