NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0020327

Scaffold Ga0334979_0020327


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0020327 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4500
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006181Metagenome / Metatranscriptome379Y
F012446Metagenome / Metatranscriptome280N
F015582Metagenome / Metatranscriptome253Y
F082581Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0020327_2534_2893F006181N/AMKRNLINIIYPDEAVNSFVMTTDMSTADILERVFAEWNHGSGRECEMFINSKKRSLSVNDIVCVNGTYFQCASVGWYEVSPEYVNALEKEVADHPSRLDGAWFALSEVMWGRKCVVETV
Ga0334979_0020327_2961_3305F082581N/AMNNVSNDSNMNSTSTKTTSKAGRPAKNLKLILNKSFTLKDLQTLNPDVKAVTIRAAVLRGLSNGKYTKLPRNVQTGRKGKPANIFINTKVYKANLANLAKSKAVATVTAEVVTA
Ga0334979_0020327_3475_4047F012446N/AMKKLQKEFTGNYDKVGMNKFVQIKKENGVAIYQRFNTDGTPRSYEVFIVKVVPKGAPLPNGKTVEESYEQYPGANAFGKTAYDCRTLGQAEERFDQLVIKAKDSAEAKEESAKTGIRNRGRRGTSKKIKLDMTLNKGTKFTAKFLMSALGVTQPVLFPILKQWEKEGSIKVNGTVKAEGKGRPATEYIVV
Ga0334979_0020327_4099_4395F015582N/AMPEIDPELQDEQLEDAKYLEELNHYVNTLSAPSAEAVALYSAKLSMLEDIHTEIRAKYPDFKPVYDSSMDAALNQDLGKYQEMTYSFSSRDLSGNRSE
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