Scaffold Ga0334979_0014994

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0014994
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5277
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011074	Metagenome	295	N
F019816	Metagenome	227	Y
F033030	Metagenome / Metatranscriptome	178	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0014994_1504_1722	F033030	N/A	MTDKKWSTGGWKNSTAKGEVINFTINDVKYSMWKNAYKTEDKQPDYKIYINDFNPENKTYSKPKDDTEGLPF
Ga0334979_0014994_3019_3600	F011074	N/A	MQLVGINNPGEVKLAILEDWIRTQYGGFTINEVKVAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANEVRKMIPQEREQAIPHLTDLEIIDYSYQEYRVLENRTFDRLFNPLSVFTKLHNSGIKTWTKEDGAVAKKKLMEIITYKANKMDIISAKQYRDEWTEQWLKNQARAVAVALFFEEQILQNKTTFK
Ga0334979_0014994_926_1162	F019816	N/A	MKELLPFERQILLAEVYHYAWYNEEAYEDLLAFIKKYENKLDKPVFFNPINNNDTTTTNLEPLAYGQDLDTNPGSNQI