Scaffold Ga0334979

Basic Information
Taxon OID	3300033996 Open in IMG/M
Scaffold ID	Ga0334979_0014586 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033996 Open in IMG/M

Scaffold ID

Ga0334979_0014586 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5352
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (40.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5352

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (40.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F001897	Metagenome / Metatranscriptome	620	Y
F005503	Metagenome / Metatranscriptome	398	Y
F016643	Metagenome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0014586_4272_4427	F005503	GGAG	MSNEIGLFVIMAIACILWALMSYSIGYKEGHKDGYQRGKAVKRHASSQVVR
Ga0334979_0014586_4427_5029	F001897	AGGTGG	MAFMDNYEGNKERTDRWLATFPQGRLEAHIVEFNAEKGYVLVQAKAYRNQLETDPAGIDYAHGYLAAYPDKMKRWMIEDTCTSALMRVMALVMGGTEKATKEVMAIVKTETPAADYDYWTTKHGDVPSYQTREEAEEADETGWAVNGVPMCSHGSMRWNQSKPDAPKAWAGYFCTEKAKENQCKPRWYVLTSDGTFKPQV
Ga0334979_0014586_5097_5306	F000403	N/A	VAGVQMSDYIEIIHPQTMTAKLLCNGVLVEEYKIEQCDKCSQLRRFDKFGYQKGYDRTENIIWFCGDCR
Ga0334979_0014586_619_1866	F016643	N/A	MTLFNPVWRVKIGGVQYTNYVLANLSTTSGRTNIYEQANAGYVNLELINLDQSNIDIEINDSVTIELQDSTATFVPIFGGTVVDLGIGIAASGAVGINQSVRITAVGALARLPKALTDGVLTQDFDGDQILTILTDLLVNSWNEVPAALTWATYDPTTQWQDAENTGLGEIDTPGSYELAQRSSSTIDVYSLVSALATSGLGYIYEDAQGRISYASADHRSIYLATNGYTDVSAAQALANSLFVQTRAGDIRNEIVLKYGTNSNSEVTDSDADSILAYGKLAQIITTTVKHQNDAEDQAAFYLTLRAYPQANFNQITFELTNSEIDDADRDALIGIFMGLPLRITNLPLNMASGTYLGFVEGWSWRASYNSVSVTAILSPLSFSLQAMQWQDVAIAEQWNTISGSLNWADALVVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334979_0014586

Overview

Ecosystem & Geography

Associated Families

Sequences