Scaffold Ga0334979_0014313

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0014313
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5407
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031492	Metagenome	182	Y
F047047	Metagenome	150	N
F048305	Metagenome	148	N
F049615	Metagenome / Metatranscriptome	146	N
F057369	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0014313_4125_4367	F047047	AGGAGG	MATQPKQHRYPAVNLLNTFTPGTNDQQIGDMLGISRSCVVRWRTVGKTLYEYQADTYAIRLGFHPAEIWHNWLDDAMSIA
Ga0334979_0014313_4390_4608	F057369	GAGG	MIEDPVAEFIEAAADGLCTAYVVVATVERIDGSQSFWITTLNRQTSSTTLGLLVSATSAEQYRIAKSLTEGM
Ga0334979_0014313_4775_4951	F031492	N/A	MTQFNVGDKVILDDESGVIESVLVGANETKYDVRYGHTFMIATDVPEEDIQPWQADEQ
Ga0334979_0014313_4948_5172	F048305	AGG	MGMSDYDLHIKGQDFRIAELISETAMEQLAARKAQIEIAELCVEVARLNSHIQTLETTLAAMSGELHALRIDTQ
Ga0334979_0014313_5172_5387	F049615	N/A	MTPDTVNLIAELEQRVSELSAALELVTEDRDNLRDAGNSLMTELDLCRATLVQAHSDISRLRVYLAQGAEL