Scaffold Ga0334979_0012793

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0012793
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5739
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.88%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044325	Metagenome	154	Y
F049410	Metagenome	146	N
F062749	Metagenome	130	Y
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0012793_2889_3056	F044325	N/A	MKQLIQKLLFGYRTNPNAYTPKGGAKLTQQGGNPEAIHSALVLMQYNIRNAERIN
Ga0334979_0012793_3167_3334	F102493	N/A	METTLTLHWEFEQPDFENGIIGGWVLTDITNGKIPVHLSPKLEQLINEELDPENL
Ga0334979_0012793_3337_3528	F062749	N/A	MKTKLSLILWAVAALFMSFWAVSFAMTGMYYGNSEVLTFTLSFCASLTSAVCGAGFMQQWLKK
Ga0334979_0012793_5139_5324	F049410	N/A	MTRGTRYTNGTEVITFVKIDFIAIGGRKIDHVYFRRKDKNDLIMPLVEWNIKGKFEWLIT