Scaffold Ga0334979_0012011

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0012011
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5926
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001332	Metagenome	720	Y
F004955	Metagenome	417	Y
F024977	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0012011_1643_1852	F004955	N/A	MDMVMTFNPSKALIALVGLICMTVLIAVGSIDQDQGLPIITMIVGYSVGNGMAALTNKTVEPIVKKKGQ
Ga0334979_0012011_3367_3591	F001332	AGG	MTEQLAEMTAAIAKAEIAMKAAAWQLQAQTDDIAMLRKALFELAYVAEENGIYLSNLTKSTQDAIVAMRLGGFK
Ga0334979_0012011_5083_5307	F024977	AGGAG	MTEFMQPIHPMRVITGDHEYTFTIPVFAIAISNSHDVEYLTINGSFYRTATIKFAEIMINGTWVRLETRHHPAT