Scaffold Ga0334979_0010223

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0010223
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6472
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F003134	Metagenome / Metatranscriptome	505	Y
F005697	Metagenome / Metatranscriptome	392	Y
F021065	Metagenome / Metatranscriptome	220	Y
F025683	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0010223_1296_2549	F003134	GGA	MTQWNPVWKVEIDGVEYTDAILANLTIRSGRTNIYEQAQAGYVNLELIDIAQTAIPVSINSTIGVEIKNTSNTFIPIFGGNVVDIGLEVRDVGSTTFTQTYNITALGALARLPKFIFTDSLPRDFDGDQIFDVLQEILLSQWQSVPGSLTWATYNPTETWANAANTGLGEIDRPGNYDLAARSGSADPIDAYTLVAALATSGLGYIYEDAQGRIGYADSTHRSTYLAANGYVDLDAKHARAAGLRIETRVGDVRNAITIKYGANSTSDVSASDAASIATYGNLAQIITTTLHDAADANAQAAFYLSLRANPQPIFSEITFDLTNPEIDNADRDNLLGIFMGEAIALTNLPLNMNSGRFQGFVEGWSFQASYNQLSVTLLLSPLAYSLQAMAWEDVPITESWNSVSPTLDWENATIVA
Ga0334979_0010223_4786_4959	F025683	GGAG	MVLDLLDPATLGRLVLVIVLMVMGAAVGYAKGFKDGKREGMARRKAMVRHMSNKAVN
Ga0334979_0010223_4959_5618	F005697	AGGCGG	MGFLDGYEASRERLERWLKTFPTGRIETRIVEFSAEKGYVLVEAKAFRNDTDMNPAGIDYAYGYQAAYQPNMKRWFCEDTVTSAIMRVQQLVMGGAERSTKEIMEQVDRTPAKVANAEKDYDYWTTKFGDVPSYKTAAEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCSHGHMIWKQSHDGAPKTWGGYFCTERTKATQCTPRWYVLRSTGKWEPQV
Ga0334979_0010223_5615_5809	F000403	GGAG	MSDFVEIIYPQTMTAKLMENGEVIAEYKVEQCDKCSKLTKFDAFGYQKGYDKAEKIIWFCAGCR
Ga0334979_0010223_5806_6300	F021065	N/A	MKMQLTRQEEFTCHDAAIHLAKNNTDYWQTREGGYSTDKSLHDLIAQDAQSIGSEWVVAKYLGVEFDPFEQKGKTKADVGSHFEVRWTKYVAGHLVVHEYDRPNDVAILVTGESPNYFIAGWIPIAMAKRPKYRHTKQPNWWVTQINLQPIENLRRSNYGHNPV