Scaffold Ga0334979_0008383

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0334979_0008383

Scaffold Ga0334979_0008383

Overview

Basic Information
Taxon OID	3300033996 Open in IMG/M
Scaffold ID	Ga0334979_0008383 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7178
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043939	Metagenome	155	N
F051927	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0008383_3414_4283	F043939	AGG	MALPATDAGQAIAFLRHLFKPYSDGFIEIRPLSKVKPHANRTTYRLPHCLKGEEGQALTQHIMSLAMRGYDVYCGVCPRIAPPGPGRKLGKDSIEQVGSVWIDLDAKVPGSSQDLLDGCDIVIHTGNGWHGYVMLPAVANCRNTKDRTAIEAKIRSWQNSIILGTDPVGNVDRIMRIPGTLNWKNPDEPKAVTLLKGGAMRPTHKESLIVRHLKDGRLDALLASAKQGQLGRAVPRIRHASGRITDLLDVFFLEAEEACQAFESNAAWEYRLDIVRADLPEIMEYYFGS
Ga0334979_0008383_6354_6662	F051927	GGAG	MRRCIECGSEVIDFDKTCTACRVSEWQDQQEQAQKLRDRHYALEANRSAYLGRKRAVRDSIRAGVITAVAVMLFLALVSATRDAMRYEYQTKPAALKAQGVK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.