Scaffold Ga0334979_0007636

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0007636
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7535
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022608	Metagenome / Metatranscriptome	213	Y
F026826	Metagenome / Metatranscriptome	196	N
F044367	Metagenome	154	N
F085367	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0007636_1165_1428	F022608	N/A	MDRVYIELLQKDSLIEQAYLSHSKEVLLYQVIDSSKKDIESLQSLVYTIDAENMGLHLDNEKQKTQIKTNRTISFIAIVTLFLFIAL
Ga0334979_0007636_1729_1983	F085367	AGG	MKPAIELYLLSVRMLTAADAVGLPENGFRKSIRSFELWAKEQSEVVEGLDSEVHARAVHNFNVIIDSIDHDTLSLPIGELTIEK
Ga0334979_0007636_3835_4113	F026826	GAG	MKFEPYLGKQLTRAIKANTTRFERQVVSEKHLISVHTLNTVISGERKITNFNEPALTEIIKVAIRNANNNGKTLADYYQKKEAAKATSLNNH
Ga0334979_0007636_4326_4493	F044367	N/A	MKKEILKVGTMLMPLGFTVALVDCKVYAVINFVIGFACLLELIDVKLKEKNKLRS