Basic Information | |
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Taxon OID | 3300033996 Open in IMG/M |
Scaffold ID | Ga0334979_0006048 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8468 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F012648 | Metagenome / Metatranscriptome | 278 | Y |
F073254 | Metagenome | 120 | Y |
F079678 | Metagenome | 115 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0334979_0006048_1339_1980 | F079678 | GAGG | MATIVTPAELRSVLGVSNSLYNDAYLTDVIDTAESVILPMLVRYSSPIDTVTLQDNIATYGVLGDNNFNEGQSVVITGVGSPFNGTFTIIESSNIDVESFIVRSSSRIYLDGAYREFNGYFTVAITGADINERKVIPSGLATLSGASTYVGNAAVESAVLAVSVEVFQSRIAPGGQIEGIDFTQVSPYRLGRSLFNRVSGLLGPFIDTDSMCQ |
Ga0334979_0006048_2799_3065 | F012648 | GGAG | MQQQITIKYNDGSEDTYLVKPPDYAKWEMTTKKVISNFGGMWDILFVTHSAMKREAGGKSIKPLETWMESVADVEVGGDDPKVIQGEA |
Ga0334979_0006048_5029_6270 | F073254 | N/A | MTIWTPDYAVEVNGRGDVTNLTIADLIITSGRTDIYSQPVAGYTRFTILNLNEGATGFDVNDSVVVKVKDSTGTYIPIFGGDVTDIDVTVRTGEPAITQAITVTALGALSKLPKTLTEGVLSKDFDGDQIYEILQDVLFDQWNEVPAAETWAAYTPTTTWENAENSGLGEIDRPGDYELTARSASTTDVYSLVANLARSGLGYIYEDSSGRIGYADSTHRAQYLAANGYAYVDAGWAYASSIATSRRLGDLRNEVTITYKNNAQETASDAASIATYGYQAENIVTTIENQSDAEDQAAFYLEIRAYPQDQFRAITFPMANPNIPDLSRDQALGIFMGLPLDIEDLPLNIADGRYQGFVEGWTWTSRFNALDLTIIVSPVAFSLQAFRWNSVPVTETWNTLSPTLDWNNATIVA |
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