Scaffold Ga0334979

Basic Information
Taxon OID	3300033996 Open in IMG/M
Scaffold ID	Ga0334979_0006048 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033996 Open in IMG/M

Scaffold ID

Ga0334979_0006048 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8468
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

8468

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (66.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F012648	Metagenome / Metatranscriptome	278	Y
F073254	Metagenome	120	Y
F079678	Metagenome	115	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0006048_1339_1980	F079678	GAGG	MATIVTPAELRSVLGVSNSLYNDAYLTDVIDTAESVILPMLVRYSSPIDTVTLQDNIATYGVLGDNNFNEGQSVVITGVGSPFNGTFTIIESSNIDVESFIVRSSSRIYLDGAYREFNGYFTVAITGADINERKVIPSGLATLSGASTYVGNAAVESAVLAVSVEVFQSRIAPGGQIEGIDFTQVSPYRLGRSLFNRVSGLLGPFIDTDSMCQ
Ga0334979_0006048_2799_3065	F012648	GGAG	MQQQITIKYNDGSEDTYLVKPPDYAKWEMTTKKVISNFGGMWDILFVTHSAMKREAGGKSIKPLETWMESVADVEVGGDDPKVIQGEA
Ga0334979_0006048_5029_6270	F073254	N/A	MTIWTPDYAVEVNGRGDVTNLTIADLIITSGRTDIYSQPVAGYTRFTILNLNEGATGFDVNDSVVVKVKDSTGTYIPIFGGDVTDIDVTVRTGEPAITQAITVTALGALSKLPKTLTEGVLSKDFDGDQIYEILQDVLFDQWNEVPAAETWAAYTPTTTWENAENSGLGEIDRPGDYELTARSASTTDVYSLVANLARSGLGYIYEDSSGRIGYADSTHRAQYLAANGYAYVDAGWAYASSIATSRRLGDLRNEVTITYKNNAQETASDAASIATYGYQAENIVTTIENQSDAEDQAAFYLEIRAYPQDQFRAITFPMANPNIPDLSRDQALGIFMGLPLDIEDLPLNIADGRYQGFVEGWTWTSRFNALDLTIIVSPVAFSLQAFRWNSVPVTETWNTLSPTLDWNNATIVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334979_0006048

Overview

Ecosystem & Geography

Associated Families

Sequences