NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0004950

Scaffold Ga0334979_0004950


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0004950 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9396
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027413Metagenome / Metatranscriptome194N
F029049Metagenome / Metatranscriptome189Y
F066777Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0004950_425_934F029049N/AMSRVAKVILDRSQEITAHQKGLERAISINADPGDANQFGQRFTNYHEFIWQKAESAGAETAVANYFGDYGFVPKVDTFHDEADVGENIEVKWTKHANGHLIIQNRPNPRPNDVAILVTGWSPVYILLGWMPVHMAMQPRYKHTYQDNYWVPRANLFEMQYLERSNYGDV
Ga0334979_0004950_5317_6492F027413N/AMATGRDDIDLQCNAGYARMEIVNVNNTAFDIDVTDVLTLELKNSSGTYVPVFGGAVSDFGISVRSPEEVGFITIGSILAVGSLAKLTKALFPDALPKTEDGTQIYDILNELLINSWFEVAPALRWMDYDPTTTWANAENVGLGEIDQPGLYEMISRAADPANSYNLCAQIAQSALGQIYEDKAGRVCYADADHRTAYLSANGYTTLSANYATPSSVKSILQIGKIRNSLVFNYGNNYNNQATALDADSIANYGRYQRAVNSNLHNLSDVNDVMDRELGLRAIPREQLQAITFRLDSGDLPDAERNKLIDVFFGEPIVINDLPINMFNGSFNGFLEGFAIRATPQFVDITLTLSPTDFSLVAPQWDTVSPANLVWTGVNATLIWENAFGGLT
Ga0334979_0004950_922_1128F066777GGAMEAAGIEMGELTFIKDGVATTIHDNGETTVVNAKRCDQCDQWQTALGGFSYRDVSGEVVIWLCAQCRA
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