Scaffold Ga0334979_0004948

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0004948
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9398
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009514	Metagenome	316	N
F034507	Metagenome	174	N
F048999	Metagenome	147	N
F093496	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0004948_7074_7319	F009514	AGG	MTKQQILALQSIGKGIIEAANIDSIGAPSGVIYSALMSHGASLNQFQQIMSTLERHGFLSHDVDANTYHATDAGLQWSKKV
Ga0334979_0004948_7330_7509	F048999	AGG	MITITLHQKTDNDGWKTIKSLPIDSAQWCKIDRSWIDTLMESGSMVITIGHTMYSIDKN
Ga0334979_0004948_7577_7810	F093496	AGG	MTFYQAAIDNFPEDQAAIDADFALSLFETEGSDYYYQWLMKERSSVIHNTFDDNQDQIKRYIDRFNELTADKTRFYM
Ga0334979_0004948_8367_8621	F034507	AGGTGG	MKLEWQNLWDAMEKNPSEWIETTQKMYWDMLESVPPRAQNSRGFLVGEPLSDNAEGYPIYACFKKSGDNYYAKNLTLSEFRGEV