Scaffold Ga0334979_0004842

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0004842
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9522
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F003134	Metagenome / Metatranscriptome	505	Y
F005697	Metagenome / Metatranscriptome	392	Y
F009503	Metagenome / Metatranscriptome	317	Y
F021065	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0004842_2955_4205	F003134	N/A	MTQWSPVWKVTIDGTEYTNAVLANLVIRSGRTNIYEQAQAGYTNIQLIDVNQTAIPVQINSTISIQIKDTSNTFVSIFGGNVVDIGLEVRDVGSTMFTQTYSITALGALARLPKALTDGVLSKEFDGDQIFDILSNVLFNTWAQVAPSVTWGTYTPATTTWATAENNGLGDIDRPGNYELANRSSSRTDVYSLVSALATSGLGYIYEDAQGRIGYADSTHRTNYLAANGYVDLDANHARAAGLRIQTRVGDVRNSLTIKYGSTSSAEQSASDANSIALYGTLAQIITTTLEKSADALAQANFYLSLRAQPQPIFSEIAFDLTNPEIDNADRDALLNVFMGEAISLNNLPLNMNSGTFQGFVEGWSFQAAYNRLSVTLLLSPLAYSLQAMRWNDVPITETWSSVSPTLDWANATIVA
Ga0334979_0004842_6706_7392	F005697	AGGCGG	MGFLDNYEASRERLERWLKTFPNGRIETRIVEFSAEKGYVLVEAKAYKGKPHGNECTVSADVIELPDGVDFAFGYQGAYQQNMKRWFVEDTVTSAIMRVQQLVMGGAERSTREIMEQVEKTPAKVANTDIDYWTTKHGEIPSYKTAAEAEQSGIPSLGSSMDEIAKQLGGQLVEEAPQCAHGHRIWKQAHEGAPKNWGGYFCTERTKATQCAPNWYVLASDGKWKPQV
Ga0334979_0004842_7374_7586	F000403	N/A	VETTGVIVADYSEIIYPQSMTAKLLLNGEVVDEYKIEQCDKCSILMRLDPFGYQKQYGGEKVIWFCKGCR
Ga0334979_0004842_7592_8080	F021065	N/A	MALTRQEEFICHEAAIALAKNNKDYHEWKEGSYTPEKSFHDQIAQDAHSIGAEWVVAKYLNVDFQPFEDKGKRRADVGSHFEVRWTKYVAGQLIIHEYDRTDDVAILVTGESPHFFIAGWIPIAMAKRPRYRHSKQPNWWVTQINLQPIENLRRSNYGQNQI
Ga0334979_0004842_8061_8222	F009503	GGAG	MDKIKFECRKCKKITEQIIHKITDNLPDGVEVIQCTKCEVMGVAQIGTSNANL