Scaffold Ga0334979

Basic Information
Taxon OID	3300033996 Open in IMG/M
Scaffold ID	Ga0334979_0004759 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033996 Open in IMG/M

Scaffold ID

Ga0334979_0004759 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9610
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (22.73%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9610

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (22.73%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002259	Metagenome / Metatranscriptome	577	Y
F003659	Metagenome / Metatranscriptome	474	Y
F006697	Metagenome / Metatranscriptome	366	Y
F036110	Metagenome / Metatranscriptome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0004759_1144_1698	F002259	N/A	MGMSAQDKMITVANRLGLTSLKDMQGTTRMVYDSITTAALTHTFFKGAAQRVFPLTNVGANGNQFQVDEALLVEKIGFFIPTDATGATYLGLVGNSVKFDLVIGNKTVIKDATCEFGGEQAFYNDGTVGSSVIDLEGVGILIPPQVEYYVVAKTFNTQTRVATSNRLGCYLFGTGALLNFNTTI
Ga0334979_0004759_1701_2240	F006697	N/A	MANQVNKLAYVDSKLGVSLPGQQTTRVIYDSINASAAQQYFEFFTNFAGKTEFQTNLTTNKLDSAESMVIKSIQIICNSATANLTDHLNLNITVGNQVVLKDFDPSFNSSNRGLSFDRLHSGFNDSASLEVRLLTDIVIPPQVNFKATLQFSNALLAANDDITIVLKGYGRIFSAGASF
Ga0334979_0004759_2254_2655	F000710	N/A	MASNINISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIIFSATTSAAPATQINAMQLRVTLTINNDVVIDDVCAHDLGASTQGVSSGFPNFIPFPRALTGQDTILLRVTNSAGASQILNATVYYKNEI
Ga0334979_0004759_5401_5769	F003659	N/A	MPTAADVLGRYLIAREDVPVYDLPNGTRIGEIKKGNSTAEVYSYVVRGGQVWWMFDYTIPGQAPGAYYVLQKDGRFSLSAAPGNVQVTTAQLAPVDVFPGVNKNLFVYGGLGLLALLLITRR
Ga0334979_0004759_7133_7303	F036110	AGGA	MTEWIFFGATVLVSVTGFLISRELSRVSDELKHLRQDVFRLSVDLAKLEERIDSIL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334979_0004759

Overview

Ecosystem & Geography

Associated Families

Sequences