Scaffold Ga0334979_0004727

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0004727
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9642
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (15.38%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F009600	Metagenome	315	Y
F011218	Metagenome / Metatranscriptome	293	N
F014228	Metagenome	264	N
F015723	Metagenome / Metatranscriptome	252	Y
F024249	Metagenome	206	N
F025437	Metagenome	201	N
F043238	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0004727_1339_1512	F043238	N/A	MKYQTISQLLRELKSVDISESILKDIETIEKVTLRIAYHNALIGVPFEQWYESTFEK
Ga0334979_0004727_1528_1854	F024249	N/A	MIFTYNDLKFWLENADLLPQSYWDALEDYDPDNKNSDEILAKFLGYVHVADFYNYEMDITYVEETYNEDGYTNTVAYPTTSIYGEAPKLADDIYTKWLNWATQVASEE
Ga0334979_0004727_3614_4027	F025437	N/A	MRPFEIRQLKVSKEQYYARLGFQDNGSRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHKDRLIYGDYQHYYKVACCVLEENPMACIDKPDFEAMEQELNKLNEVVAELSKYKELYLTLKKTFDEF
Ga0334979_0004727_4251_4562	F009202	N/A	MYPSDDSHDLYIREKQLMLAGTAMWLAKQAADKAKGREVQDDLLHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANSKLRVDAEQMIYEIQRLQGIIEDSL
Ga0334979_0004727_5576_6013	F015723	N/A	MPKIISITPTGQWQDLFKLEVRFENGDFGTAFAKSQTPPYAVGEDVEYSKNEKGTIKIQRANAFGATTGGAYTPSAPSFAAKQDDRSASIIRQVALKSAVEYACAAQHDVNTILANAETFNAWMTGASSAPASHTEHFANRNDPF
Ga0334979_0004727_6203_6583	F009600	N/A	MRLSDTRQLTYKIVVGKVPSLNAFYASKHWTARVKAKELVSKEVMSQLEKYDLQEIKDVQIYCKVNYRYDIDNAIMAVKFALDTFKTWGGVKDDSRKYVHSLKLVHDTTIPKDTAEITFTGLLVSE
Ga0334979_0004727_6556_6756	F011218	N/A	MQYYTNPAKRRKIDFILEECATLMSNCDSDYQSRQQAKYKEQELLGEIAKIDLHFAIQCGYLIPDN
Ga0334979_0004727_7336_7743	F014228	N/A	MNSKLNPNRLAMWTILLTATLAVVSSCATVKPVLESVVVRDTVIVTQTKYLTDTLELFKDTTIYQDKVRLQLQYIDRKVYVEATCLPDTIRVTQTKILTKEKKQRGWTLEGGLTMLAIVLVAAYFVKKWIDKLLE