Scaffold Ga0334979_0003899

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0003899
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10657
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004362	Metagenome / Metatranscriptome	442	Y
F006502	Metagenome / Metatranscriptome	371	Y
F078379	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0003899_3922_4299	F006502	N/A	MKEKGMSIMIGLLGKEPKMAEKSEGGLLESDTESCPLSTVDADINKGNKKKAILTANYGARKDGEGKCKACEYYMQGEEMAKCGVGKGMGHCAIFDFVCSNENGCQAWEAQGAEYAEEYMEGEED
Ga0334979_0003899_4472_4870	F004362	AGGA	MTLDDRLRNWAWYVSGSVIPQPDSTCRSFEKNYIPELGNLYAPEEPHYEPDNRDGELIEDAIKGLPLELRKILKARYVSHPYASQNQLAHTLRISTRRFETDLHNAKKRLQDQLDKRAKSNHLADLLKMPTA
Ga0334979_0003899_9078_9326	F078379	GGA	VVDFSDENDGESWVEVCEVFYDKNHEPYLYTARGVGVMGEDIEEVKQNLYRMLDCLNKPVLMKADFNKNIKVWVDEDTSQDS