Scaffold Ga0334979_0003403

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334979_0003403

Scaffold Ga0334979_0003403

Overview

Basic Information
Taxon OID	3300033996 Open in IMG/M
Scaffold ID	Ga0334979_0003403 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11378
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (74.07%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018702	Metagenome / Metatranscriptome	233	Y
F043392	Metagenome / Metatranscriptome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0003403_3794_4039	F043392	AGGA	MKIVDKDYHPNGSANPFVVAIVDSPEDGDTKLVIMFEDYDYIAVLSLDYLVRDEDISVRFNGHHGDRYEKLREALWDDFAG
Ga0334979_0003403_9055_9210	F018702	AGG	MKTEAKFIRRRIAVAVIFFALVGWAFDATTPEQCKVPTEQMSQFCVDLIYP

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