Scaffold Ga0334979_0003179

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0003179
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11772
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049410	Metagenome	146	N
F068425	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0003179_10463_11059	F068425	N/A	MGVLVANNNNMKPQHQLITFAVLCLLLVIGLNHCAKEQPKVIPFDYKAEAELMKKQFGIEQAILLNQLEAATRRLQVANNAKDSIRKREISLTNTNIALLKKLRQTLPKECDTVFVLCDEIINVKDSSYAALFTAFQSCVDVSTIKDSLIVTYKAENVTDSTLLVISKQETKQQRKGKVAAWCVGGAMFMLWLIVGLK
Ga0334979_0003179_11323_11508	F049410	GGA	MTRGTRYTNGKEVITFIKIDFIVIGGRKIDHVYFRRKNKVDLIMPLLEWNLKGKFEWLIT