NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0003179

Scaffold Ga0334979_0003179


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0003179 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11772
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049410Metagenome146N
F068425Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0003179_10463_11059F068425N/AMGVLVANNNNMKPQHQLITFAVLCLLLVIGLNHCAKEQPKVIPFDYKAEAELMKKQFGIEQAILLNQLEAATRRLQVANNAKDSIRKREISLTNTNIALLKKLRQTLPKECDTVFVLCDEIINVKDSSYAALFTAFQSCVDVSTIKDSLIVTYKAENVTDSTLLVISKQETKQQRKGKVAAWCVGGAMFMLWLIVGLK
Ga0334979_0003179_11323_11508F049410GGAMTRGTRYTNGKEVITFIKIDFIVIGGRKIDHVYFRRKNKVDLIMPLLEWNLKGKFEWLIT

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