Scaffold Ga0334979_0002734

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0002734
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12733
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (42.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013412	Metagenome / Metatranscriptome	271	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0002734_10416_10901	F010835	GGAG	MNAVALRTERALVDWLAAQDWSASPLGTPACLTSYGHGAFADADLEDRMPDFPRIIVRASTAVPVHPLDRTCELDVTAILQLSADDTSEPHLLTVVQVFENLLQYLYVDGNISELNADDTDPSGGFNAQFAIPTDFGINDTSERARTFTRSMTIFAAANAI
Ga0334979_0002734_1065_1394	F013412	GGAGG	MRHLWSRGFGKLYADAEVITTDDGKRFLLAVVEFEKRTLANGKPYAQRVTFRSFDADDLESVGMLTSGTHIMFDGDCDATADKSSTGWWYANPRVTGRIHEIIPPNDAS
Ga0334979_0002734_11677_12132	F007260	N/A	VNLIATSLQLGMTVLQGAMGNPSFLWQGQLVRCLPAAITDSNSVIAGGFQDNVQVRLLVKLADWRLADSTLVTVDASVWSCDVGSNADRLLQESGSLILQENTDRLLTTFGKMIPVVGRLVTYDGRQLRIMSARRDGSGAYYVLDLGAKTK