Scaffold Ga0334979_0002197

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0002197
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14219
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F001897	Metagenome / Metatranscriptome	620	Y
F003182	Metagenome / Metatranscriptome	502	Y
F005452	Metagenome / Metatranscriptome	400	N
F016643	Metagenome	245	Y
F032155	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0002197_1362_1571	F000403	N/A	MGATGMSDFVEIIYPQEMKARLMCNGEIVEEYKIEQCDKCSQLRRLDHFGYQKGYDKQDNIIWFCGDCR
Ga0334979_0002197_1553_2185	F001897	GGA	MMASFMDRYEGNKERTDRWIATFPQGRLESHIIEFNAEKGYVLVQAKAFRNQTEIDPAGIDYAYGYLAAYPDKMKRWMIEDTCTSALMRVMALVMGNTEKATKEVMALVKSESPAVDYDYWSTKHGDVPSYQTAAEAEQAGTPSFGSSEDSAWTAHAVPSCSHGSMRWNQSKPDAPKSWGGYFCSEKIKEKQCTPRWYVLRSTGKWEPQV
Ga0334979_0002197_2443_2637	F032155	AGG	VGEWTAVGGLVITTLAAVYSSMRIIIKAVMSELAPNSGSSMKDQISRIETRLDYLYTQLIEQKK
Ga0334979_0002197_4814_6061	F016643	N/A	MSVFNPVWRVIIGGETYTNYALANLSITSGRTNIYEQANAGYVNLELINLDQSIIDIEINDAVTIELQDSTNTFVPIFGGTVTEFDIGIAASGVVGINQSVSILALGALSRLPKALTEGVLAKDFDGDQILTILTDLLINSWNEVPAALQWATYDPTEQWQDAQNTGLGEIDTPGNYELANRGSSTINVYSLVSALATSGLGYIYENALGQISYADSTHRSVYLAANGYTDLSAAQALADSLSIQTRAGDIRNEIVIKYGNNSANEVVDSDATSIGLYGKLAQIITTTIQNASDAGDQAAFYLTLRAYPQANFNQITFELTNPEIDDADRDALINIFMGLPLRINDLPLNMAAGTYLGFVEGWTWRAAYNSVSVTAILSPLAFSLQAMQWQDVAIAEQWNTISGSLDWATALVVA
Ga0334979_0002197_723_905	F003182	GGAG	MHILQFDCSICSKLYGKPKQRHGLKKGAELTEHEWFAQCMSCGTFGIKIVDDARIKEMSL
Ga0334979_0002197_886_1365	F000903	N/A	MIDRIEEVQCMIAAIQHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAELVVAKRLGYDYTPGITWDKSKADVGEHIEVKWSANPASNLWIQESDRHDRDIAVLVTGNAPKMHIVGWMPVAVAKKPRYRNASQNNWSVPQINLQPIETLMRSNYAHPSI
Ga0334979_0002197_9002_9376	F005452	N/A	MSIESAIRTPLKTALSGIAANVYNGIPETMTSPSICLIPGAPYLESVLLGKNTTKVKVNLTVTGVVGYANNAAALDNLETLMISIIAAMPNGYEVGNVNQPQPLEVGAGKYLTADLQVSTYYNQ