Scaffold Ga0334979_0002188

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0002188
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14249
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004366	Metagenome / Metatranscriptome	441	Y
F033725	Metagenome / Metatranscriptome	176	Y
F102839	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0002188_11393_11941	F033725	N/A	MITILNREIPNQLDELTIEQFEAITEINNNQELDPIDKHLQVFAYLGIPESEFWDYDVADFVGMVKEFNSAERKEYPTVEELEIDGYIYKAQMKLTVRDTKLIEKITLKKEKGYISEMLAVMFKREDLTPTEHYTDAHIKQKAKLIRKLNAAISIPYVMFIAQKIGQQANDQATAELEPSNA
Ga0334979_0002188_4_297	F102839	N/A	MEYEDKDEVDDEQDLHAKILEDKIYSTHKGMIEIYRSEISDHVHRIVFEAYIDKGYTTARAMAKYFDIPVTSAHYLIKEIKQNLRKLQYRYETISNN
Ga0334979_0002188_8859_9293	F004366	N/A	MNSLQAIIDHIELFYNNHLQVKKVGSDFKEQLYNFATKNEKYPIVFVAPVSVIPTENTSEFNFDIYCYDIIQKDRANIITILSDTQQILNDLYVYYMDGTDYSFDVVGVPSFQALNNDLLDYAAGYVMNITLTVNDWTDCAVPV