NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334979_0002009

Scaffold Ga0334979_0002009


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0002009 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14920
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (84.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001326Metagenome / Metatranscriptome721Y
F001872Metagenome / Metatranscriptome623Y
F002421Metagenome / Metatranscriptome560N
F009743Metagenome / Metatranscriptome313N

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0002009_13729_14028F009743AGGAGMKIKLQLKRTADSAPEFYYTNLFVSTEWERITGRNLQQMVNAPLESDYCVWMHVILKMRGEQVGDNWRDWVKSMPEMEIIPVLDETNPNPTDAAPTAAN
Ga0334979_0002009_153_785F001326AGGCGGMATYTVTNKYLIDNFAVLQLLTPSEIAVGSSIVVASVDATFNGSYVVRALPQYLFLGVDTEGDLLYDYQVPIADQVLYAKTASDVERVAASGTVSYDPVCTWVTAAQVMSYLGITITNPSDDYTLLTQSVSAGNQFCYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIESTYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA
Ga0334979_0002009_7064_7462F002421GGCGGMKTCTICKETIAYPEITGKTHFVCDGRVPAKKQAPFIQGMIASQASADARWTKPEQNQVDAAILHVARTKGFFTSDDIWKHLGDQFPVTKGIAGRLNAAARRGHIRNTGELAYAQRGGAHDHAQRLSVWAGI
Ga0334979_0002009_8616_9056F001872AGCAGGMNEFIKQVLHHSNNAMFNNGSWGVRDVKGKPGSLSVHATGRAVDLSYRGGDRHPNASRKAALPFIELLVAHANDLGIEMVIDYFPAPYGRSWRCDRQAWKKYSKPTVSGSPGGDWFHVEITPQAADSVIFVKAAFLKVFGEIPPKA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.