Scaffold Ga0334979_0001967

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0001967
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15090
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (6.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010620	Metagenome	301	Y
F010918	Metagenome / Metatranscriptome	297	Y
F017298	Metagenome / Metatranscriptome	241	Y
F061550	Metagenome	131	Y
F074877	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0001967_3352_3636	F061550	N/A	MELELLKARAILRKTLLKLKVSREEIEEKNEHRKDLINSMLETESELSEVLTTFLILEKQAREFSQSAYRLERVNLDLKFKIKDLENQLELNNF
Ga0334979_0001967_5898_6044	F010918	N/A	MKSYRVTFNYFEGRKKLIGTRMIEALDKDHAFMLMAMWPRLILKIETI
Ga0334979_0001967_6372_6545	F017298	N/A	METNDNQFTPTTFSLKRKMNWWREQSSADDKGGSFNLELYLDYLSQQDFNEPKLQEK
Ga0334979_0001967_6885_7061	F074877	N/A	MNKEEMIEIILDYSVELRDEYNEMVGAFGYKDESAQRLQIKYTTILLLIEKLGLNENY
Ga0334979_0001967_9060_9527	F010620	N/A	MKKLIVFLSVLTLFSCSSERKAQYHYQKALKHGLKLIQDSDTIQIVSIDSIPIIINDTIIWEKIITSKDTIVFFKNVYVPKTKWQTRIEYRYKTKLIKQDVLKYKYIYREAKEKRKEVQLTKSKTNWILFFWGFLAGFLTFLILRFISKIYLPFK