NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0001955

Scaffold Ga0334979_0001955


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0001955 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15135
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (72.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004670Metagenome428Y
F005027Metagenome / Metatranscriptome414Y
F034929Metagenome173N
F071244Metagenome122Y
F084244Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0001955_12135_12470F004670AGGAMKDHLLEELPLFRATDPDTSRQIKPIRINSHRGILLAIYAGNISGLTDEEAANIAVSRGHVINGYWKRCADLRTQGLIHDLGVRKTLSTGSQGMVCAITRFGLDIATGCYD
Ga0334979_0001955_12501_12713F034929N/AMGLLLALAKNDGQQTMIPTWGYVALRSKDKKTMVQVFTDLSTGLIVYTQVCQRAESWHSWGPPTEVSRFD
Ga0334979_0001955_13148_13384F005027AGGAMETSTGELIAKLTNLSHNLALELRFKESSLVLEAVGALHALPNIAETIRDSWHPSLNTSGPSKGLSYLSSVKLADDES
Ga0334979_0001955_5263_5421F071244AGGMFTIISPRVGTPGDKFEPSEDINTEALIEGGFIKSDKTPTKSAKTVETSLEE
Ga0334979_0001955_6247_6768F084244N/AMAVDVTMEFSGLKEALKEINTIDKKLRRQITRDFKQIVQPVVGKAESMLPNNAPLSGMKRSWKGKSGADIMSWNDALVRRNIKAFTSGKKVRDTGLGFKQNLGTFGIKWLGPQASALDMMAKGTMGDNLTNRFGPPSRIIYRAYEAADAKVQADVKELVNKVMKMTNSAMRMK
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