Scaffold Ga0334979

Basic Information
Taxon OID	3300033996 Open in IMG/M
Scaffold ID	Ga0334979_0001919 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033996 Open in IMG/M

Scaffold ID

Ga0334979_0001919 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15262
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (67.74%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

15262

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (67.74%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012434	Metagenome	280	Y
F016936	Metagenome / Metatranscriptome	243	Y
F024061	Metagenome / Metatranscriptome	207	N
F029363	Metagenome / Metatranscriptome	188	Y
F034845	Metagenome	173	Y
F042326	Metagenome	158	Y
F059946	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0001919_10511_10699	F042326	AGGA	MISDALTLAATFASGGILGYIIGSARGRKRGRDEQWVECFLAGEKREKARREADGRFKSKTK
Ga0334979_0001919_10696_10908	F059946	N/A	MNKRKSDEAKRIQCDAMLAQFMPVKTISQALKMSRGTVSERAKRAGMTRHYITEAEARLLFKNRIGGGAK
Ga0334979_0001919_12844_13131	F034845	AGGAGG	MTAARTAYWREYNRRNSAKKREQYAAFRERNKDKINADKRAARAAGKVAPRKASAIRAVKPTVAKPRTDEGKAEALLTLREKFAAFRAKRAEGRE
Ga0334979_0001919_5388_5555	F012434	GGAGG	MSATDALTNALVLALTAPDQARADRAIALAESIGAGCTPRQIATAKRNASKLAAK
Ga0334979_0001919_6225_6587	F029363	AGGA	MNNDDDINGEDGSMDIHRELLFAAKDLRTMTSCKAEITISRRVTIKIGAIKPSWDYQITFGDILNRGAWRWECAQSDSLEGAMDITRAQITAQGDEKARELLQLTDAAAKLGLKLVEAAP
Ga0334979_0001919_6778_7185	F016936	N/A	MNLELIHAELIRIREALEARPFASGAPAAKPAAPRSEEVPMPTEVIDDAGSVQVHFGKNKGVALSSLGDRSVAWYAQEPEPRIGNNGKPFPPRPEDVLLRNAARTIIHQKRGTLPSAAVPTTPAVTSVNEEHVPF
Ga0334979_0001919_8894_9190	F024061	AGG	MNTGEIKNQAVINNATEQFRSLLETHFVAIARSAEESFVEEENQTEPKAKASFALEWDALSLAPKVVVKIGWSVRYKDETESMVDPLQSKLGLVEDAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334979_0001919

Overview

Ecosystem & Geography

Associated Families

Sequences