Scaffold Ga0334979

Basic Information
Taxon OID	3300033996 Open in IMG/M
Scaffold ID	Ga0334979_0001835 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033996 Open in IMG/M

Scaffold ID

Ga0334979_0001835 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15621
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (23.08%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15621

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (23.08%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005349	Metagenome / Metatranscriptome	403	Y
F007690	Metagenome	346	Y
F019478	Metagenome	229	Y
F022886	Metagenome / Metatranscriptome	212	N
F025032	Metagenome	203	N
F030763	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0001835_11507_11854	F025032	N/A	MEGENNTDKFTFKQRDAGGVRPSYQNTKVVKQGSAGDYVKYNVMVMGKFGGTIYYNKADKTMIASGGESNTTFPPKRFKSIKDAIDYVGGNSTRSYNTNIPLDGMDTSFGTARYV
Ga0334979_0001835_12627_12938	F030763	N/A	MLVIKNFKKIKNQWYGDWQIGRVDEMKECYALQAFNSITKKSITMAILREPMMDETEYDTAYRISLVEDDKKPSNIIDDVIYHSVLEDMELFGESLVHYLNTL
Ga0334979_0001835_12932_13246	F022886	GGA	MITIKNWDKLTRLFRSQIDIGELELYYEITYYYPTLPSNEYYRITLSRISPPQHDHPNKNKYLMLCGESEYWLTKKQLEDVDAVYESIVDVVVRHNLNNNGVKC
Ga0334979_0001835_13607_13909	F019478	N/A	MLLKIKNTNRLVGTQFWNGRFKCLQVHETDTNYRFQFDDSEITGRYVWIEVSKIGRLDTDGDWTYLLNYTRCNQHLVTAKWFEDWKNVTKTFGDALKKQF
Ga0334979_0001835_14574_14924	F007690	N/A	LKIIEIKNIGKMLTIKNILKLQNQPIWDGWEVKLIYEGNHNGTYIFELHRESAWGNGDCKIMLERTGHKLPNKSNLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKENL
Ga0334979_0001835_4890_5123	F005349	N/A	MAYLVHKQLIPTDKSMGDPNWAKRQIWVLKLNGNDTIDEFETIEEAQTKVGLLMNEDPSGRIYKVVQKNEDGTFSDI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334979_0001835

Overview

Ecosystem & Geography

Associated Families

Sequences