Scaffold Ga0334979_0001494

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0001494
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17321
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028808	Metagenome / Metatranscriptome	190	N
F029414	Metagenome / Metatranscriptome	188	Y
F093866	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0001494_14742_15065	F093866	N/A	MNELSKIDMANLVFSEDKKIKIKNVLCDKYGATDVQYRDLSYGICIDVVGTDSFRFVKNAIMKTLDVHEETLSVLGESKRSMKASYVYLPEKDKALNKRLKKLKTTV
Ga0334979_0001494_15811_16287	F029414	N/A	MYMILLRNLLSEAPIGLTVYRGVNPAYGDVGLGINSTKIGDKLVATLGPNHTDNLDVAKRFGKQIITTKLNGSGLELAHYNDIINLYKQYENMLPPGLAKQIKYSSGQEQLNLIQLAGKELRNILSKKYGYIKSPLAVSDANYLSQKGLTGDLYIPLR
Ga0334979_0001494_8640_9050	F028808	N/A	MKRYSLLYESSIYDYLVWEPTGKFQYIADELDKIPTDSTKLYRGMSEKEYNILKSTGKVTSRGKGNTRNISGSYLASDFKLAARFALVNYRDKGEGIIVVVDKSKLPDLKNVDPGNYVTSYIPIEAVTKIIDLKQL