Scaffold Ga0334979_0001478

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0001478
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17424
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (76.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044356	Metagenome	154	Y
F064409	Metagenome	128	N
F065547	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0001478_1643_1813	F044356	AGGAG	MIEYFHPAYPKLYRIGGEYAPGLARLFGAHECHEGKAHDVVDGKCIKCGVHIKENT
Ga0334979_0001478_1810_2181	F064409	AGGAG	MKLFKLKGVSKKYALRAAYYRRAARDQGVAGLAFDENALRELFDWESRGVGSVDKSKNGFAYGKWCVDLAVSMWIEDILKGDFCKAEFLETPIQRLHNKKKLDTITAPAFFPYADLLDKRRNK
Ga0334979_0001478_2916_3098	F065547	AGGAG	MNQKKPQHLHERLGMSTEEALNRLISFGQLNHKYKQEHGESINPQHLDAVLNATQPKEKT